| Sequence ID | hg18.chr11 |
|---|---|
| Location | 93,107,925 – 93,108,000 |
| Length | 75 |
| Max. P | 0.996688 |

| Location | 93,107,925 – 93,108,000 |
|---|---|
| Length | 75 |
| Sequences | 6 |
| Columns | 76 |
| Reading direction | forward |
| Mean pairwise identity | 86.01 |
| Mean single sequence MFE | -18.02 |
| Consensus MFE | -13.71 |
| Energy contribution | -13.74 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.538812 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>hg18.chr11 93107925 75 + 134452384 AUAUCCCUUCUUAUAUGUAUCAAAACUCAUACUGAACAAUGAGUUCUGGGUUGCAAAAGAGGAUUUAU-UUUUUGC ......((((((...(((((((.(((((((........))))))).)))..)))).))))))......-....... ( -14.80) >mm8.chr9 108937603 74 - 124000669 AUAUUCCUUCUUGUAUAUAUCAAAACUCAUACUGAGCAAUGAGUUCUGGGUUGC--AAGAGGAUUUAUAUUUUUGC ....((((.((((((....(((.(((((((........))))))).)))..)))--)))))))............. ( -20.30) >oryCun1.scaffold_94908 1068 74 + 5219 -UGUUCCUGCUUGUAUGUAUCAAAACUCAUACUGAGCCAUGAGUUCUGGGUUGCAAAAGAGGAUUUAU-UUUUUGC -...((((.(((...(((((((.(((((((........))))))).)))..)))).))))))).....-....... ( -15.90) >bosTau2.chr29 551396 74 + 45822729 AUGUUCCUUCUUAUCUGUAUCAAAACUCAUACUGAACAAUGAGUUGUGGGUUGCAAAAGAGGAUUUA--CUUUCGC ....((((.(((...((((((..(((((((........)))))))...)).)))).)))))))....--....... ( -15.20) >echTel1.scaffold_316886 84615 74 - 105239 AUGUCCCUUCUUAUCUGUAUCAAAACUCAUACUGCACAAUGAGUUUUGGGUUGCAAAAGAGGAUUUA--UUCUUGC ......((((((...(((((((((((((((........)))))))))))..)))).)))))).....--....... ( -18.30) >monDom4.chr4 174696894 75 - 430141050 UUGUCCCUUCUUGUAUGUAUCACAACUCAUACAAAACCAUGGGUUGUGGGUUGCAAAAGAGGGUUUGU-UCUUUGC .....(((((((...(((((((((((((((........)))))))))))..)))).))))))).....-....... ( -23.60) >consensus AUGUCCCUUCUUAUAUGUAUCAAAACUCAUACUGAACAAUGAGUUCUGGGUUGCAAAAGAGGAUUUAU_UUUUUGC ......((((((.......(((.(((((((........))))))).))).......)))))).............. (-13.71 = -13.74 + 0.03)



| Location | 93,107,925 – 93,108,000 |
|---|---|
| Length | 75 |
| Sequences | 6 |
| Columns | 76 |
| Reading direction | reverse |
| Mean pairwise identity | 86.01 |
| Mean single sequence MFE | -16.99 |
| Consensus MFE | -16.25 |
| Energy contribution | -15.89 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.58 |
| Structure conservation index | 0.96 |
| SVM decision value | 2.73 |
| SVM RNA-class probability | 0.996688 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>hg18.chr11 93107925 75 - 134452384 GCAAAAA-AUAAAUCCUCUUUUGCAACCCAGAACUCAUUGUUCAGUAUGAGUUUUGAUACAUAUAAGAAGGGAUAU .......-....((((.(((((......((((((((((........)))))))))).........))))))))).. ( -17.66) >mm8.chr9 108937603 74 + 124000669 GCAAAAAUAUAAAUCCUCUU--GCAACCCAGAACUCAUUGCUCAGUAUGAGUUUUGAUAUAUACAAGAAGGAAUAU .............(((((((--(.....((((((((((........)))))))))).......)))).)))).... ( -18.40) >oryCun1.scaffold_94908 1068 74 - 5219 GCAAAAA-AUAAAUCCUCUUUUGCAACCCAGAACUCAUGGCUCAGUAUGAGUUUUGAUACAUACAAGCAGGAACA- .......-.....(((((((........(((((((((((......)))))))))))........))).))))...- ( -16.99) >bosTau2.chr29 551396 74 - 45822729 GCGAAAG--UAAAUCCUCUUUUGCAACCCACAACUCAUUGUUCAGUAUGAGUUUUGAUACAGAUAAGAAGGAACAU ((....)--)...(((((((........((.(((((((........))))))).))........))).)))).... ( -15.69) >echTel1.scaffold_316886 84615 74 + 105239 GCAAGAA--UAAAUCCUCUUUUGCAACCCAAAACUCAUUGUGCAGUAUGAGUUUUGAUACAGAUAAGAAGGGACAU .......--....(((..((((((....((((((((((........)))))))))).....).)))))..)))... ( -16.30) >monDom4.chr4 174696894 75 + 430141050 GCAAAGA-ACAAACCCUCUUUUGCAACCCACAACCCAUGGUUUUGUAUGAGUUGUGAUACAUACAAGAAGGGACAA .......-.....((((.(((((.....((((((.((((......)))).)))))).......))))))))).... ( -16.90) >consensus GCAAAAA_AUAAAUCCUCUUUUGCAACCCAGAACUCAUUGUUCAGUAUGAGUUUUGAUACAUACAAGAAGGAACAU .............(((((((........((((((((((........))))))))))........))).)))).... (-16.25 = -15.89 + -0.36)



Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Nov 24 16:49:09 2006