| alignAt(AlignMatch) |  | 0% |  | 0% | 6 | 6 | 53 | 53 | 1 | 1 |
| ComparatorGlue(JFrame, FeatureDisplay, FeatureDisplay, AlignmentViewer) |  | 0% | | n/a | 1 | 1 | 18 | 18 | 1 | 1 |
| maybeRevCompQuery(AlignMatch) |  | 0% |  | 0% | 6 | 6 | 15 | 15 | 1 | 1 |
| addDisplayListeners(FeatureDisplay, FeatureDisplay) |  | 0% | | n/a | 1 | 1 | 9 | 9 | 1 | 1 |
| makeAlignmentEventListener() |  | 0% | | n/a | 1 | 1 | 3 | 3 | 1 | 1 |
| getSubjectForwardStrand() |  | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getQueryForwardStrand() |  | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getSubjectReverseStrand() |  | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getQueryReverseStrand() |  | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getSubjectGotoEventSource() |  | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getQueryGotoEventSource() |  | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getSubjectEntryGroup() |  | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getQueryEntryGroup() |  | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getSubjectSelection() |  | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getQuerySelection() |  | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getOrigSubjectForwardStrand() |  | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getOrigQueryForwardStrand() |  | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getAlignmentViewer() |  | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getSubjectDisplay() |  | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getQueryDisplay() |  | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |