| readBlast(LinePushBackReader) |  | 0% |  | 0% | 19 | 19 | 74 | 74 | 1 | 1 |
| readWiggle(LinePushBackReader) |  | 0% |  | 0% | 13 | 13 | 53 | 53 | 1 | 1 |
| parseWiggle(String) |  | 0% |  | 0% | 8 | 8 | 25 | 25 | 1 | 1 |
| readData(LinePushBackReader) |   | 62% |   | 64% | 14 | 22 | 10 | 54 | 0 | 1 |
| UserDataAlgorithm(Strand, Document, boolean) |   | 74% |   | 46% | 14 | 17 | 12 | 62 | 0 | 1 |
| getValues(int, int, float[]) |   | 61% |   | 57% | 10 | 15 | 9 | 25 | 0 | 1 |
| incrementLines(Color) |  | 0% |  | 0% | 2 | 2 | 9 | 9 | 1 | 1 |
| parseHeader(StringBuffer) |   | 82% |   | 75% | 7 | 15 | 7 | 40 | 0 | 1 |
| parseTrackLine(String) |  | 0% |  | 0% | 2 | 2 | 8 | 8 | 1 | 1 |
| getSubString(String, String) |  | 0% |  | 0% | 2 | 2 | 5 | 5 | 1 | 1 |
| getDefaultMaxWindowSize() |  | 0% |  | 0% | 2 | 2 | 3 | 3 | 1 | 1 |
| getDefaultMinWindowSize() |  | 0% |  | 0% | 2 | 2 | 3 | 3 | 1 | 1 |
| getDefaultStepSize(int) |  | 0% |  | 0% | 2 | 2 | 3 | 3 | 1 | 1 |
| isWiggleFormat() |  | 0% |  | 0% | 3 | 3 | 3 | 3 | 1 | 1 |
| getDefaultWindowSize() |  | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getMaximumInternal() |  | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getMinimumInternal() |  | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getAverage() |  | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getWiggleStart(int) |  | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getWiggleSpan(int) |  | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| isIndexed(Document) |  | 90% |   | 50% | 1 | 2 | 1 | 4 | 0 | 1 |
| readIndexValues(boolean, Entry, int, int) |  | 84% |   | 50% | 1 | 2 | 1 | 4 | 0 | 1 |
| static {...} |  | 100% | | n/a | 0 | 1 | 0 | 9 | 0 | 1 |
| getValueCount() |  | 100% |  | 100% | 0 | 2 | 0 | 3 | 0 | 1 |
| getLineAttributes() |  | 100% | | n/a | 0 | 1 | 0 | 1 | 0 | 1 |