Next: VcfOutput, Previous: OutputAlignments, Up: Exporting [Contents]
The OutputAsTable filter writes the nucleotide content of given positions in a table format.
maf.filter= \
[...],
OutputTable( \
file=data.txt, \
species=Species1,Species2,Species3, \
reference=RefSpecies, \
compression=none), \
[...]
|
file={none|{path}}A file path where to write date in table format.
compression={none|gzip|zip|bzip2}Compression format for output file.
species={list of {string}}Select species for which data should be output (one column per species).
reference={string}Which species should be used for outputting coordinates.