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The Output filter writes all blocks to a MAF file.
maf.filter= \
[...],
Output( \
file=data.filtered.maf.gz, \
compression=gzip, \
mask=yes), \
[...]
|
file={none|{path}}A file path where to write alignment blocks, in the MAF format.
compression={none|gzip|zip|bzip2}Compression format for output file.
mask={yes|no}Tell if sequences should be masked (if a mask annotation is available), or if masking information should be ignored.