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The SelectChr filter keeps only block from a given chromosome (or contig or scaffold...) for a given reference species.
maf.filter= \
[...],
SelectChr( \
ref_species=species1, \
chromosome=chr01), \
[...]
|
ref_species={string}The species name for which chromosomes should be extracted.
chromosome={string}The name of the chromosome/contig/scaffold to be filtered.